PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0058s0058.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 342aa    MW: 37572.6 Da    PI: 6.0357
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0058s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-174391355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  Kalax.0058s0058.1.p 43 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 91
                         56******.**********965...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.9E-3342105IPR001471AP2/ERF domain
PROSITE profilePS5103220.4954299IPR001471AP2/ERF domain
CDDcd000184.78E-294298No hitNo description
SuperFamilySSF541717.19E-204399IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-284398IPR001471AP2/ERF domain
PRINTSPR003672.3E-74354IPR001471AP2/ERF domain
PfamPF008479.2E-114591IPR001471AP2/ERF domain
PRINTSPR003672.3E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNTTQDTTSI REQKGLSLRP TGTAYGSECR RIGRRRQAEP GRFLGVRRRP WGRYAAEIRD  60
PTTKERHWLG TFDTAHEAAL AYDRAALSMK GTQARTNFVY PDSSGSPLHS LLTPFSPSHS  120
VFNADHQCSK QKLTSSQTIT CCHSCVCRSV QCPYATQTSL YDHQKAGDDH VLFAVGSEYN  180
SGDLSCIVPE VCLKPPASTC TDDSSKDYLS LGSPRTDQNW GFKNSTAPDA NLLSPELQLQ  240
YDNLKDVASM TTTVVKNADH EIGWISRLSN SNGFWSDAED QNLLWEMNYG ELAALISNPM  300
KMGEDNNVSF QVATPSSASA ATYSASIADF GDVIDFSYPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1838105169ATERF1
3gcc_A1e-1838105169ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6J9Q23e-48ERF86_ARATH; Ethylene-responsive transcription factor ERF086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-49ERF family protein